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Dear all,
I am getting the same problem on ubunto 18.04 without WSL. I would be glad for
advice how to fix it.
Best,
Lars
________________________________
Von: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu]" im Auftrag von
"falk.luesebr...@med.ovgu.de [falk.luesebr...@med.ovgu.de]
Gesendet: Freitag, 25. Januar 2019 10:41
An: Freesurfer Mailinglist
Betreff: Re: [Freesurfer] Longitudinal processing with windows subsystem for
linux (WSL) using ubuntu 18.04.1 LTS
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Dear Juergen,
Thanks for your quick reply! Actually the spelling error is in the error
message. Taken from http://martinos.org/~mreuter/long/long_mris_slopes
# extensive error checks
# if options.fsgd is None and
if options.qdec is None:
# print 'ERROR: Specify --fsgd or --qedc'
parser.print_help()
print '\nERROR: Specify --qedc (and other required arguments)\n'
sys.exit(1)
# if options.fsgd is not None and options.qdec is not None:
# print 'ERROR: Specify either --fsgd or --qedc, not both'
# sys.exit(1)
At least Martin is consistent with his typo. :D
Best,
Falk
Von: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> Im Auftrag von Juergen Haenggi
Gesendet: Freitag, 25. Januar 2019 10:35
An: Freesurfer Mailinglist <freesurfer@nmr.mgh.harvard.edu>
Betreff: Re: [Freesurfer] Longitudinal processing with windows subsystem for
linux (WSL) using ubuntu 18.04.1 LTS
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Dear Falk
I have no idea, but recognised that the error refers to --qedc and not to
--qdec.
maybe there is a spelling error somewhere that is related to your problem.
HTH
Cheers
Jürgen
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On 25 Jan 2019, at 10:26,
falk.luesebr...@med.ovgu.de<mailto:falk.luesebr...@med.ovgu.de> wrote:
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Dear all,
Has anyone run the longitudinal pipeline successfully using the WSL? I’m
running it with Ubuntu 18.04.1 LTS and
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c.
I’m trying to process my first longitudinal data set following the instructions
of the tutorial as close as possible. The data has been processed without
issues and now I want to do the statistical analysis. When I run:
long_mris_slopes --qdec ./long.qdec.table.dat --meas thickness --hemi lh
--do-avg --do-rate --do-pc1 --do-spc --do-stack --do-label --time years
--qcache fsaverage --sd $SUBJECTS_DIR
I get the following error:
File "/home/luesebri/Software/FreeSurfer/bin/long_mris_slopes", line 448
print '\nERROR: Specify --qedc (and other required arguments)\n'
^
SyntaxError: invalid syntax
I get comparable errors for any other long_* command I try to run, e.g.
long_qdec_table with or without any arguments gives:
File "/home/luesebri/Software/FreeSurfer/bin/long_qdec_table", line 119
print '\nERROR: Specify --qedc'
^
SyntaxError: Missing parentheses in call to 'print'. Did you mean
print('\nERROR: Specify --qedc')?
Does anyone have a clue where this error originates from using either WSL or
Ubuntu 18.04?
Best,
Falk
...............................................
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Universitätsklinik für Neurologie
Otto-von-Guericke-Universität Magdeburg
Medizinische Fakultät
Leipziger Str. 44
39120 Magdeburg
Telefon: +49-391-6117-512
falk.luesebr...@med.ovgu.de<mailto:falk.luesebr...@med.ovgu.de>
http://www.kneu.ovgu.de/kneu.html
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