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 <>Dear FreeSurfer Developers,

 

I´m trying to extract the cortical thickness of individuals from a study cohort 
based on an hammersmith n30r83 atlas segmentation. I have this atlas only in as 
a volumetric file. I already run recon-all on all subjects. I tried 
mri_vol2surf and then mris_seg2annot but without success so far. What commands 
would you recommend me to run?

 

Thanks,

Boris
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