Hi Atena
mris_convert wiil convert any surface to ascii if the output file name.
For example
mris_convert $SUBJECTS_DIR/$subject/surf/lh.pial \
$SUBJECTS_DIR/$subject/surf/lh.pial.asc
while convert the pial surface to ascii format. We don't generate mesh
representations of the boundaries of the cerebellum or the thalamus, but
you could with either mri_mc or mri_tessellate if you wanted.
mri_tessellate is old enough that you would need to create a binary
surfafce first then convert it, but mri_mc will do it directly:
mri_mc $SUBJECTS_DIR/$subject/mri/aseg.mgz 10 <output path>/lh.thalamus.asc
cheers
Bruce
On Fri, 15 Feb
2019, Atena Rezaei wrote:
External Email - Use Caution
Hi,
How can I extract the mesh file of gray matter, white matter, Cerebellum and
Thalamus from freesurfer in
Ascii format?
Thanks in advance!
BR,
Atena
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