Can you tar or zip the subject's folder and upload here. ftp://surfer.nmr.mgh.harvard.edu/transfer/incoming When the upload is complete, send an email to us and indicate the name of the file.
On 3/14/19 7:27 AM, Maria-Eleni Dounavi wrote: > > External Email - Use Caution > > Dear Freesurfer developers and users, > > I am running the freesurfer recon-all pipeline for a big dataset and I > am particularly interested in the hippocampus. For 20% of my subjects > the hippocampus along with other subcortical structures are misplaced > in the aseg.mgz image, which affects also the subsequent subfield > analysis. > > > > I was wondering which steps must be followed to fix this and which > surfaces need to be corrected. > > So far I have corrected/checked the initial brain mask and added > control points to the analysis but there is no difference in the end > result. > > > I would be grateful if you could let me know how to tackle this issue. > Apologies if a similar question has been asked in the past and I > missed it. > > > Best Wishes, > > Marialena > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
