Try this
mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C
lh-Avg-thickness-age-Cor.mtx --glmdir lh.V1_gender_age.glmdir
You would only use --surface if the input is a surface map (not when the input
is a table, even if the table has data derived from the surface)
On 3/23/19 3:39 PM, Olamide Abiose wrote:
External Email - Use Caution
Hello,
I am struggling to run mri_glmfit because various flags seem to be going
unrecognized.
This is my command:
mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C
lh-Avg-thickness-age-Cor.mtx —-surf fsaverage lh —-cortex --glmdir
lh.V1_gender_age.glmdir
Where "V1_lh_stats.txt" is a table of V1 thickness values produced by
aparcstats2table. I've run into issues with the --table, --fsgd, and --surf
flags (as I shuffle around the command line arguments and/or replace the
--table flag with a --y flag). Any idea what's going wrong?
Thank you!
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