External Email - Use Caution Dear all,
I am having a difficulty in transforming the segmented subfields of Amygdala atlas from surface based .mgz to nifti format. I have extracted the labels using mri_extract_label lh.hippoAmygLabels-T1.v21.nii.gz 7009 Cortico_amygloid.mgz then i convert .mgz file to NIFTI using mri_convert Cortico_amygloid.mgz Cortico_amygloid.nii.gz. Later i tried to transform Cortico_amygloid.nii.gz to MNI space using FLIRT but i notice seed region Cortico_amygloid.nii.gz is oriented in different place. Kindly let me know what more i have to do , in order to transform .mgz label into MNI space. Thanks Vasudev
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