External Email - Use Caution You should never mix FreeSurfer versions according to the FAQ, see https://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/FAQ#Q.CanIrunsomecasesinmydatasetusingoneversionofFreeSurferandothersusingadifferentversionofFreeSurfer.3F
Best, Tim > On June 25, 2019 at 1:22 PM vittal korann <vittalkor...@gmail.com> wrote: > > > External Email - Use Caution > > Hello FreeSurfer experts, > > I'm planning to run QDEC on Schizophrenia and controls. To do that I ran > recon-all for few subjects in 2 different systems. Both systems have ubuntu > 16.04 OS but different freesurfer versions. One is using FS version6 and > other is FS version5.3. > > Just for confirmation, I ran recon-all for the same subjects in 2 above > said systems. Now both yield different values for the area. Here I have > tabulated the values: > > fsid Left-Lateral-Ventricle Left-Inf-Lat-Vent Left-Cerebellum-White-Matter > Left-Cerebellum-Cortex Left-Thalamus-Proper Left-Caudate Left-Putamen > Left-Pallidum 3rd-Ventricle 4th-Ventricle Brain-Stem Left-Hippocampus > Left-Amygdala CSF Left-Accumbens-area Left-VentralDC Left-choroid-plexus > Right-Lateral-Ventricle Right-Inf-Lat-Vent Right-Cerebellum-White-Matter > Right-Cerebellum-Cortex Right-Thalamus-Proper Right-Caudate Right-Putamen > Right-Pallidum Right-Hippocampus Right-Amygdala Right-Accumbens-area > Right-VentralDC Right-choroid-plexus WM-hypointensities Optic-Chiasm > CC_Posterior CC_Mid_Posterior CC_Central CC_Mid_Anterior CC_Anterior > INSP015 16157.6 1227.3 11526.1 50572.8 6893 3228.3 5076.3 1927.7 2698.1 > 2577.8 17706.7 3525.3 1594.6 1164.3 538 4063.9 889.6 10616.9 1179.4 10638.1 > 50615.7 7252.9 3612.1 5719.7 1788.7 3852.7 1980.1 504.5 3762.4 748.8 728.9 > 194.4 854.8 393.8 393.9 425.8 1042.1 > INSP015 16157.6 1227.3 11526.1 50572.8 6893 3228.3 5076.3 1927.7 2698.1 > 2577.8 17706.7 3525.3 1594.6 1164.3 538 4063.9 889.6 10616.9 1179.4 10638.1 > 50615.7 7252.9 3612.1 5719.7 1788.7 3852.7 1980.1 504.5 3762.4 748.8 728.9 > 194.4 854.8 393.8 393.9 425.8 1042.1 > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > INSP019 7059.6 296 10820.8 42288.3 6177.2 2785.3 4573.8 1793.4 1283.5 1819.9 > 18958.5 3546.9 1535.8 1212.9 471.2 3741.7 583.6 7378.3 249.5 10200.6 42803.5 > 6173.9 3078.5 4617.6 1861.3 3638 1599.3 473.7 3532.6 627.1 591.4 270.3 897.7 > 443.6 497.5 460.7 798.9 > INSP019 6962.9 288.8 11995 44004.4 6471.6 2883.8 4653 1888.6 1285.7 1706.1 > 18983.8 3619.9 1515.5 1117 493.8 3790.8 620.7 7446.8 273.6 10674.7 42678.1 > 6220.8 3109.2 4498.1 1943 3540.7 1658.3 499.8 3656.3 652 735.6 189.4 863.6 > 470.6 434.4 502.6 749.1 > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > IYBA009 10661.7 644 16029.1 61364.8 7534.2 4416.4 5562.8 2279.9 1335.2 > 1775.6 24381.2 3787.8 1666.3 970.4 624.4 4286.9 709.1 9079.2 803.7 15172.2 > 59565.1 6989.7 4334.1 5550.7 2267.8 3928.2 1743.1 582.4 4465.2 676.6 728 > 195.6 667.6 426.8 363.9 362.4 929.1 > IYBA009 10730.6 722.5 16662.8 60503.6 7686.1 4328.3 5430.1 2256.9 1365 > 1720.2 24139.9 3749.1 1635.9 995.6 639.8 4374 573.9 8963.9 795.2 15817.6 > 60176.1 7044.7 4251.9 5423.8 2241.1 3715.8 1749.2 600.2 4418.1 623.8 953.8 > 155 664.6 444.3 401.5 370.4 924.9 > > > The above variation is because of different versions or each time > freesurfer yields different values? Could you please educate me more on > this. Because if the freesurfer version is the issue then I need to run all > analysis in one system which will take a lot of time. > > Thanks & regards > Vittal > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
