In freeview, you can use :overlay_color=colorscale,settings maybe Ruopeng can weigh in on exactly what to set them to to get the colorwheel Are you also looking to have freeview snap pictures for you?
On 7/18/19 11:57 AM, Matthieu VANHOUTTE wrote: > External Email - Use Caution > Sorry not to be precise on my answer. > > I can easily open freeview to load overlay on surface and configure > the color scale to "Color Wheel". > > However to create pictur es for article I automatize the creation > of those pictures by scripting using tksurfer command line. There are > different options for this command line but I didn't find any option > to set the color scale to which I want "Color Wheel". > > Is there any tool existing allowing to use "Color Wheel" color scale > by scripting ? > > Best, > > Matthieu > > On 18/07/2019 17:51, Greve, Douglas N.,Ph.D. wrote: >> I don't know what you mean by "stay graphical". can you explain? What is >> the tksurfer option to load the colorwheel? >> >> On 7/18/19 11:47 AM, Matthieu VANHOUTTE wrote: >>> External Email - Use Caution >>> Hi Douglas, Bruce, >>> >>> Freeview is really nice but stay graphical. When I want to create >>> composed snapshots of surface overlays I use tksurfer with command >>> lines to create these. >>> >>> I looked at tksurferfv with command lines but didn't see where is the >>> option to set color scale to "Color Wheel"? >>> >>> Best, >>> >>> Matthieu >>> >>> On 18/07/2019 17:22, Greve, Douglas N.,Ph.D. wrote: >>>> There is a program called tksurferfv that runs freeview but takes all >>>> the same command line args as tksurfer >>>> >>>> On 7/18/19 10:56 AM, Bruce Fischl wrote: >>>>> Hi Matthieu >>>>> >>>>> tksurfer has been deprecated for years. Is there a reason you can't >>>>> switch to freeview? >>>>> >>>>> cheers >>>>> Bruce >>>>> On Thu, 18 Jul 2019, Matthieu VANHOUTTE wrote: >>>>> >>>>>> External Email - Use Caution >>>>>> >>>>>> Dear experts, >>>>>> >>>>>> I use tksurfer in command line to generate multiple faces images of >>>>>> overlays on the fsaverage surface. >>>>>> >>>>>> Graphically it is possible via freeview to set the color scale of >>>>>> the >>>>>> overlay with "Color Wheel" setting. I searched into the tksufer >>>>>> command >>>>>> help but didn' t find any option to specify this color scale. Doas >>>>>> anyone know how to deal with it by command lines ? >>>>>> >>>>>> Best regards, >>>>>> >>>>>> Matthieu >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>>> >>>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
