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Dear FreeSurfer experts:
I am processing in qdec 3 subjects with the GUI and I have this terminal
output.
Error in Analyze: Couldn't open
/Applications/freesurfer/subjects/IXI_22_Guys_T1/surf/lh.thickness.fwhm10.fsaverage.mgz
or .mgh file.
lh-Avg-Intercept-thickness -----------------------
Does the average thickness differ from zero?
Nuisance factors: Right-Hippocampus
1.000 0.000 0.000;
I have executed recon-all -s IXI_20_Guys_T1 -s IXI_22_Guys_T1 -s IXI_25_Guys_T1
-qcache -target avgsubj20_22_25 -no-isrunning without any errors. Also
make_average_subject make_average_subject --out avgsubj20_22_25 --subjects
IXI_20_Guys_T1 IXI_22_Guys_T1 IXI_25_Guys_T1 without any errors.
The problem is that I only have files like “...fwhm10.fsaverage.mgz" in one
subject in this case IXI_25_Guys_T1 not in IXI_22_Guys_T1 or IXI_20_Guys_T1. I
do not know if that is a mistake of processing or myself it seems by the output
in qdec that I need files like “...fwhm10.fsaverage.mgz” in every subject
subdirectory “surf”.
Thanks for your help in advance!
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