Can you send command lines? Also, are you using the built-in permutation tool or trying to do something outside of FS?
On 8/6/19 8:40 AM, Daliah Ross wrote: > > External Email - Use Caution > > Hi FreeSurfer experts, > > I have a couple of questions regarding mri_segstats tool for an > analysis on vertex-wise cortical thickness data. We are attempting to > compare maximum cluster sizes among permutations. We are having > trouble figuring out how to get the anatomical label for each cluster > using the --slabel argument. We are also wondering if the difference > between cluster sizes between mri_surfcluster and mri_segstats is due > to partial volumes, and if so, how to correctly use the --pv argument. > It suggests in the wiki page that mri/norm.mgz volume is usually used > but I believe we need something surface-based since we are using > thickness data. > > Thank you in advance for any help you can provide. > > Best, > Daliah > > *Daliah Ross* | [email protected] <mailto:[email protected]> > > Ph.D. Student, Clinical Psychology with Health Emphasis > Ferkauf Graduate School of Psychology > Yeshiva University > Albert Einstein College of Medicine > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
