Dear Zheng, I believe you ran out of memory. How much RAM does your machine have? You need about 10GB to run this. Cheers, /Eugenio
-- Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of 郑凤莲 <zhengfenglian0...@163.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Friday, 9 August 2019 at 01:19 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Hippocampal subfields External Email - Use Caution Dear /Eugenio, Here is the log files and all results for one subject as the attachments. I have run a lots of subjects and all result directories didn't include l(r)h.hippoSfLabels-T1.v10.mgz file. Sincerely, Zheng At 2019-08-08 09:49:30, "Iglesias Gonzalez, Juan E." <jiglesiasgonza...@mgh.harvard.edu> wrote: Dear Zheng, Can you please send us the log files? Kind regards, /Eugenio -- Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of 郑凤莲 <zhengfenglian0...@163.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Wednesday, 7 August 2019 at 21:19 To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Hippocampal subfields External Email - Use Caution Hi exports, I am using FS6.0 to segment hippocampus. I run "recon-all -s bert -hippocampal-subfields-T1" and it said "recon all bert finished without error". However, in mri directory, there is no l(r)h.hippoSfLabels-T1.v10.mgz file. And in tmp directory, there are two directories, "hippoSF_T1_v10_left" and "hippoSF_T1_v10_right". But in these two directories, the l(r)h.hippoSfLabels-T1.v10.mgz file is still not exsit. What's the matter? I need your help. Thanks very muxh in advance. Sincerely, Zheng 从网易163邮箱发来的云附件 [Image removed by sender.]<http://fs.163.com/fs/display/?p=X-NETEASE-HUGE-ATTACHMENT&file=G-b3qYIpqPb3JDXJ0A047b7py5g69iVSmmIFcThcCOcB6oj2z_omEpB8wqbsFq50xOBA6-GnslKTWj_4hb3Fxw&title=Re%3ARe%3A%20%5BFreesurfer%5D%20Hippocampal%20subfields> hippocampal-subfields-T1.log<http://fs.163.com/fs/display/?p=X-NETEASE-HUGE-ATTACHMENT&file=G-b3qYIpqPb3JDXJ0A047b7py5g69iVSmmIFcThcCOcB6oj2z_omEpB8wqbsFq50xOBA6-GnslKTWj_4hb3Fxw&title=Re%3ARe%3A%20%5BFreesurfer%5D%20Hippocampal%20subfields> (112.5K, 2019年8月24日 13:06 到期) 下载<http://fs.163.com/fs/display/?p=X-NETEASE-HUGE-ATTACHMENT&file=G-b3qYIpqPb3JDXJ0A047b7py5g69iVSmmIFcThcCOcB6oj2z_omEpB8wqbsFq50xOBA6-GnslKTWj_4hb3Fxw&title=Re%3ARe%3A%20%5BFreesurfer%5D%20Hippocampal%20subfields> [Image removed by sender.]<http://fs.163.com/fs/display/?p=X-NETEASE-HUGE-ATTACHMENT&file=G-b3qYIpqPb3JDXJ0A047b7py5g69iVSmmIFcThcCOecwuYYtWpTYGGNnWS7Zp0VT-kslDawp64gaGy57xjFlw&title=Re%3ARe%3A%20%5BFreesurfer%5D%20Hippocampal%20subfields> CQMS004.zip<http://fs.163.com/fs/display/?p=X-NETEASE-HUGE-ATTACHMENT&file=G-b3qYIpqPb3JDXJ0A047b7py5g69iVSmmIFcThcCOecwuYYtWpTYGGNnWS7Zp0VT-kslDawp64gaGy57xjFlw&title=Re%3ARe%3A%20%5BFreesurfer%5D%20Hippocampal%20subfields> (359.89M, 2019年8月24日 12:57 到期) 下载<http://fs.163.com/fs/display/?p=X-NETEASE-HUGE-ATTACHMENT&file=G-b3qYIpqPb3JDXJ0A047b7py5g69iVSmmIFcThcCOecwuYYtWpTYGGNnWS7Zp0VT-kslDawp64gaGy57xjFlw&title=Re%3ARe%3A%20%5BFreesurfer%5D%20Hippocampal%20subfields>
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