sorry, all the previous emails did not make it into this one so I'm a bit lost. Can you repost with the previous correspondence?
On 8/14/19 1:51 PM, Mahshid Fouladivanda wrote: > > External Email - Use Caution > > Dear Doug, > Thanks for your reply. I have used the same command in the > recon-all.log file (seen bellow), but I have a doubt for the > highlighted part in the command: > "mri_aparc2aseg --s SBJ1 --volmask --aseg aseg.presurf.hypos --relabel > mri/norm.mgz mri/transforms/talairach.m3z > */usr/local/freesurfer/average/RB_all_2016-05-10.vc700.gca* > mri/aseg.auto_noCCseg.label_intensities.txt" > which used a predefined file from freesurfer folder. Actually, I used > the mri_aparc2aseg command with some changes, seen bellow: > mri_aparc2aseg --s mysubj --annot aparc --o > $SUBJECTS_DIR/mysubj/mri/parc.mgz > so, I am wondered if it reads the ' > */usr/local/freesurfer/average/RB_all_2016-05-10.vc700.gca*' > automatically. I would appreciate it of you could help on. > Regards, > Mahshid > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
