Are you running out of memory on the machine? If not, and you upload the
entire subject dir we will see if we can replicate and fix this problem.
cheers
Bruce
On Tue, 24
Sep 2019, Троицкий Антон Александрович wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
during the processing of patient data an error occurred. I don’t clearly
understand a reason for this error. Technical description of this error is
mris_make_surfaces(10174,0x7fffbf9553c0) malloc: *** error for object
0x2431900024317: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
000: dt: 0.0000, sse=991989.1, rms=2.913
021: dt: 0.5000, sse=841468.7, rms=1.605 (44.916%)
022: dt: 0.5000, sse=803776.9, rms=1.267 (21.055%)
rms = 1.24, time step reduction 1 of 3 to 0.250...
023: dt: 0.5000, sse=793308.4, rms=1.242 (1.982%)
Abort
My suggestion is that the error associated with memory allocation and its
reading.
Is there any suggestion about why it happened and how can I prevent it in the
future?
Also, I've attached the recon-all.log in case it's of any use.
1) FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0
2) Platform: macOS Sierra 10.12.6
3) uname -a: Darwin mac-2ap023-2.fccho-moscow.ru 16.7.0 Darwin Kernel Version
16.7.0: Thu Jan 11 22:59:40 PST 2018; root:xnu-3789.73.8~1/RELEASE_X86_64 x86_64
4) recon-all.log: see attached
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