Can you send the full command line (the one below does not make sense)? And
send the terminal output
On 10/14/19 11:53 AM, Sims, Sara A (Campus) wrote:
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Freesurfers,
I am trying to use mri_mask using surface overlays. I made a label into a
volume and then into a surface with 1s inside the label and 0s outside the
label. I want to make a connectivity map surface overlay with values only
within my label overlay. However when I run it, it creates a surface overlay
with only zeros. There is definitely values within the label surface overlay (I
triple checked).
Code I used:
Mri_mask original_surface_overlay label_mask new_masked_output
It doesn’t output any errors.
Sara A. Sims
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