Hi Nayan - Try using /Applications instead of $Applications everywhere. Also,
the config file seems to be in rich text format - not sure how that'll work.
Try converting it to plain text (if you use mac, from the Format menu of the
text editor).
Best,
Anastasia.
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of nayan wadhwani
<nayanw...@gmail.com>
Sent: Saturday, October 19, 2019 1:36 AM
To: Freesurfer@nmr.mgh.harvard.edu <Freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] trac-all error
External Email - Use Caution
Hello Freesurfer,
After running recon all script which completed successfully, I ran trac-all
command which exited with error and tried running it with dicom files.
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib
Abort
ERROR: input file must be in NIfTI format
Darwin EPILEPSY 16.7.0 Darwin Kernel Version 16.7.0: Mon Nov 13 21:56:25 PST
2017; root:xnu-3789.72.11~1/RELEASE_X86_64 x86_64
trac-preproc exited with ERRORS at Fri Oct 18 22:13:02 PDT 2019
And please help me the correct config the one I created, I am attaching it
below to try it with .nii files
Thanks and Regards
Nayan Wadhwani
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
