You have to have the directory structure set up properly. You can put task and rest in the same session or in different sessions
On 10/24/19 9:43 AM, Renew Andrade wrote: > > External Email - Use Caution > > Dear FreeSurfer experts: > I am trying to use my own data so I don’t have the same tutorial > structure. I do keep the folder structure as similar as possible in > order for FreeSurfer to run but I cannot have different sessions for > example I just have resting or bold but not both. Is it a problem when > running this analysis? > > > This is my directory structure > > > *➜ **~*cd /Users/andraderenew/Downloads/2 > *➜ **2**git:(**master**) **✗*ls > *rest* > *➜ **2**git:(**master**) **✗*cd rest > *➜ **rest**git:(**master**) **✗*ls > dti_FA.nii.gz dti_L2.nii.gz dti_MD.nii.gz dti_S0.nii.gz dti_V2.nii.gz > dti_L1.nii.gz dti_L3.nii.gz dti_MO.nii.gz dti_V1.nii.gz dti_V3.nii.gz > *➜ **rest**git:(**master**) **✗* > > Sincerely, > Andrade. > > > look in sess01/bold, you should see 001 and 002. Do you? > > On 10/22/2019 9:40 AM, Renew Andrade wrote: > External Email - Use Caution > > Dear experts: > I am trying to run preproc-sess -s sess01 -fsd bold -stc up -surface fsaverage > lhrh -mni305 -fwhm 5 -per-run > But the outcome is ERROR: no run directories found. > > What could be wrong? > If you need more information let me know! > > Sincerely, > Andrade. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu><mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
