yes, the vertices in one subject do not have any correspondence to vertices in
an other subject
On 10/25/19 12:08 PM, Nasiriavanaki, Zahra wrote:
Hi Freesurfer experts
I have a few labels that correspond to activation clusters in fsaverage space
for an individual subject. I used mri_label2label to transfer them to native
space of the subject.
export SUBJECTS_DIR=/autofs/space/oprah_001/users/zn025/looming_7T/SUBJECTS_DIR
mri_label2label --srclabel ./first_levels/$subj/label/aparc/pos/lh-0001.label
--trglabel lh-new.label --srcsubject fsaverage --trgsubject ${subj}
--regmethod surface --hemi lh
When I overlay the native label on top of the fsaverage significance map
(tksurfer fsaverage lh inflated -ov sig.nii.gz), it looks like small dots all
over the map.
Is this because I'm viewing the native label in fsaverage space?
Is there a way to view these labels in this subject's native space instead of
fsaverage, something like tksurfer native(instead of fsaverage) lh inflated -ov
sig.nii.gz?
Thank you very much in advance
Mona
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
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