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> Hello FreeSurfer Developers, > > I am helping a researcher in my department run FreeSurfer on a new > computer. They insist that it should run on FreeSurfer 4.5 because their > old system ran that version. Is the following possible? We can run > FreeSurfer 6.0 fine, but they say there are differences between the > versions. > > 1) FreeSurfer version: freesurfer-Linux-centos4_x86_64-stable-pub-v4.5.0-full > 2) Platform: Ubuntu 18.04.1 LTS > 3) uname -a: Linux clps-pb1 4.15.0-64-generic #73-Ubuntu SMP Thu Sep 12 > 13:16:13 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux > 4) recon-all.log: n/a Segmentation Fault - see below > > (base) root@clps-pb1:/var/tmp# cd freesurfer4 > (base) root@clps-pb1:/var/tmp/freesurfer4# ls > ASegStatsLUT.txt DefectLUT.txt FreeSurferEnv.sh mni > Simple_surface_labels2009.txt > AUTHORS diffusion fsafd > SegmentNoLUT.txt subjects > average docs fsfast sessions > tkmeditParcColorsCMA > bin FreeSurferColorLUT.txt lib > SetUpFreeSurfer.csh > build-stamp.txt FreeSurferEnv.csh matlab > SetUpFreeSurfer.sh > (base) root@clps-pb1:/var/tmp/freesurfer4# export > FREESURFER_HOME=/var/tmp/freesurfer4 > (base) root@clps-pb1:/var/tmp/freesurfer4# source > $FREESURFER_HOME/SetUpFreeSurfer.sh > -------- freesurfer-Linux-centos4_x86_64-stable-pub-v4.5.0 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /var/tmp/freesurfer4 > FSFAST_HOME /var/tmp/freesurfer4/fsfast > FSF_OUTPUT_FORMAT nii > SUBJECTS_DIR /var/tmp/freesurfer4/subjects > MNI_DIR /var/tmp/freesurfer4/mni > (base) root@clps-pb1:/var/tmp/freesurfer4# cd .. > (base) root@clps-pb1:/var/tmp# cd f4 > bash: cd: f4: No such file or directory > (base) root@clps-pb1:/var/tmp# mkdir f4 > (base) root@clps-pb1:/var/tmp# cd f4 > (base) root@clps-pb1:/var/tmp/f4# ls > (base) root@clps-pb1:/var/tmp/f4# export SUBJECTS_DIR=/var/tmp/f4 > (base) root@clps-pb1:/var/tmp/f4# cp > $FREESURFER_HOME/subjects/sample-001.mgz . > (base) root@clps-pb1:/var/tmp/f4# ls -lrt > total 6136 > -rw-r--r-- 1 root root 6280209 Nov 19 15:13 sample-001.mgz > (base) root@clps-pb1:/var/tmp/f4# mri_convert sample-001.mgz > sample-001.nii.gz > mri_convert sample-001.mgz sample-001.nii.gz > $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ > reading from sample-001.mgz... > Segmentation fault (core dumped) > (base) root@clps-pb1:/var/tmp/f4# > > > Thanks, > > Paulo >
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