Hi Marina
for the lower res fsaverage subjects you probably want to decrease the
number of iterations of the inflation. For fsaverage6 you could try:
mris_inflate -n 5 lh.smoothwm lh.inflated.new
it should be just a min or two so you can try different values for the -n
switch
cheers
Bruce
On Wed,
15 Jan 2020, Marina Fernández wrote:
External Email - Use Caution
Dear Freesurfer team,
I created the FS average subject of the same dataset with 5th and 6th order
icosahedron tesselation using the following commands:
make_average_subject --fsgd fsgd.txt --ico 5 --out avg_subject_ico5
make_average_subject --fsgd fsgd.txt --ico 6 --out avg_subject_ico6
When I load the inflated surface of the avg_subject_ico5 with tksurfer , it
has a oval shape while when I load the avg_subject_ico6 it seems to be a
normal shape.
Please, see attached image.
Thank you in advance.
Best wishes,
Marina.
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