Hi Kirill
I think this is a question for Matti (now ccd)
cheers
Bruce
On Fri, 14 Feb 2020, Kirill
Elin wrote:
External Email - Use Caution
Hallo everybody,
I am not entirely sure whether this is FreeSurfer error actually.
I am doing first recon all which completes without errors. Then I need to
create BEM surfaces using the FreeSurfer watershed algorithm for MEG data
analysis using MNE-Python.
So the next command in the terminal is: mne watershed_bem --subject
subjectname
And it runs e.g. till:
mri_watershed ru_nivcsw 12490
mri_watershed done
and quits with errors like:
File"/work/modules/Ubuntu/14.04/amd64/common/anaconda3/latest/envs/neuroimaging
/lib/python3.6/site-packages/mne/utils/check.py", line 143, in _check_fname
raise IOError('Destination file exists. Please use option '
OSError: Destination file exists. Please use option "overwrite=True" to
force overwriting.
Now, it is unclear what file destination file is meant. This happens on
several machines for all participants.
--overwrite option does not help.
The correct outcome should include bem folder with resulting files and also
watershed subfolder with resulting files. Here and the files in bem folder
are missing and there are files only in watershed subfolder.
FreeSurfer 6.0.0., Ubuntu
Thank you in advance.
Sincerely yours,
Kirill
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