Hi Gabriel
they are in the subject's directory. Have you gone through the FS
tutorials on our wiki? That would be a good place to start
cheers
Bruce
On Tue, 25 Feb 2020, Gabriel Tapia wrote:
External Email - Use Caution
Hello Bruce thank you for your quick reply,
Where should I look to get all these files?
The idea to check them is to confirm that the MRI went wrong at some point,
right?
Thanks,
Gabriel Tapia
www.Partage3D.fr
+33 6 62 90 11 67
Le mar. 25 févr. 2020 à 04:09, Bruce Fischl <[email protected]> a
écrit :
Hi Gabriel,
that is a huge defect and generally means something major has
gone wrong.
Look at the lh or rh.orig.nofix and the corresponding
?h.inflated.nofix
over the wm.mgz file to see what is wrong (usually something
like a big
chunk of skull is left over and connected to the surface,
sometimes
through orbital fat in the eye sockets)
If you can't sort it out let us know and we will help
cheers
Bruce
On Tue, 25 Feb 2020, Gabriel Tapia
wrote:
>
> External Email - Use Caution
>
> Hello dear Freesurfer developers, nice to e-meet you and thank
you for
> working on this open source software!
>
> I am trying to produce a 3D file of a brain.
> The command I am trying to run is recon-all and here is the
error I get:
> CORRECTING DEFECT 57 (vertices=33394, convex hull=9966)
> Excessive topologic defect encountered: could not allocate
140742253
> edges for retessellation
> Cannot allocate memory
>
> The version I am using is:
freesurfer-Linux-centos4-stable-pub-v5.3.0
> The platform is Red Hat 64-bit running in a Virtual box with
7835mb
> allocated memory.
> You will find the corresponding log file attached.
>
> Isn't it surprising that I don't have enough memory with
7835mb allocated?
> Sorry, I am new to Freesurfer and there might be something I
didn't get.
> Thank you very much in advance for your help,
> Regards,
>
> Gabriel Tapia
> www.Partage3D.fr
> +33 6 62 90 11 67
>
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