External Email - Use Caution Thanks for the quick reply. I attached the terminal output to this email. We are running this on v6.
Best,
Aylin
_______________________
Message: 9
Date: Fri, 6 Mar 2020 11:50:51 -0500
From: "Douglas N. Greve" <dgr...@mgh.harvard.edu>
Subject: Re: [Freesurfer] PetSurfer reference region
To: <freesurfer@nmr.mgh.harvard.edu>
Message-ID: <64d6089e-f818-e30e-deff-98a812b72...@mgh.harvard.edu>
Content-Type: text/plain; charset="windows-1252"
I cannot replicate this in either v6 or v7beta. Can you send the
terminal output?
On 3/5/2020 1:32 PM, Dincer, Aylin wrote:
>
> ????????External Email - Use Caution
>
> Hello PetSurfer experts,
>
> We are using the cerebellum cortex as our reference region, but
> noticed that the SUVR values for lh/rh cerebellum cortex do not have a
> value of 1 (which is what we were expecting). The actual SUVR values
> are 1.31 for the lh and 1.35 for the rh cerebellum cortex. I attached
> the stats file (gtm.stats.dat) and below is the command we ran.
>
> mri_gtmpvc --i regmean.nii.gz --reg regmean_template.reg.lta --psf
> ${FWHM} --seg ${MR_ID}/mri/gtmseg.mgz --default-seg-merge --auto-mask
> PSF+2 .01 --mgx .01 --rescale 8 47 ?o regmean_gtmpvc_output
>
> Let me know if you need any more details.
>
> Thanks so much,
>
> Aylin
>
> ????????????????????
>
> _____________________________
>
> Aylin Dincer
>
> Senior Research Technician
>
> NeuroImaging Laboratories
>
> Imaging Core, Benzinger Lab
>
> 314-362-3629
>
> ------------------------------------------------------------------------
>
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pet_regmiddle_pvc_rerun_2020_03_06.log
Description: pet_regmiddle_pvc_rerun_2020_03_06.log
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