External Email - Use Caution Hi Andrew,
Thank you for your reply. I have tried this command you sent me rm -rf $SUBJECTS_DIR/ben It indeed deleted the ben folder under the subject directory, but when I try to run recon-all for this participant under another name, it still responds with the same error. I have also tried the same data in another laptop. Also showed up the error. Would you say it might be something wrong with the data itself? (Although I am quite certain this is the raw T1 data which has never been performed any analysis). Many Thanks Peng -------------------------------------------- Peng Liu, PhD Candidate Institut für Kognitive Neurologie und Demenzforschung (IKND) Otto-von-Guericke Universität Magdeburg Deutsches Zentrum für Neurodegenerative Erkrankungen e.V. (DZNE) Leipziger Str. 44| Haus 64| Raum 217 39120 Magdeburg, Deutschland Email: peng....@med.ovgu.de/peng....@dzne.de Phone: +49 391 67 25074 On Fri, 20 Mar 2020 at 14:33, Hoopes, Andrew <ahoo...@mgh.harvard.edu> wrote: > Hi Peng, > > > > Are you sure you’re deleting the subject folder from within the > SUBJECTS_DIR? > > > > rm -rf $SUBJECTS_DIR/ben > > > > Should clear the issue. > > > > best > > Andrew > > > > > > *From: *<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Peng Liu < > claudialiu1...@gmail.com> > *Reply-To: *FS Help <freesurfer@nmr.mgh.harvard.edu> > *Date: *Friday, March 20, 2020 at 6:39 AM > *To: *FS Help <freesurfer@nmr.mgh.harvard.edu> > *Subject: *[Freesurfer] Error with recon-all: You are trying to re-run an > existing subject with (possibly) new input data (-i). > > > > * External Email - Use Caution * > > Dear all, > > > > I am trying to run recon-all command for a subject ben. Before I perform > this command, I have exported SUBJECTS_DIR to a folder with only T1 data > for this subject ben in it. However after I entered the command "recon-all > -s ben -i T1.nii -all", this error showed up: > > > > ERROR: You are trying to re-run an existing subject with (possibly) > > new input data (-i). If this is truly new input data, you should delete > > the subject folder and re-run, or specify a different subject name. > > If you are just continuing an analysis of an existing subject, then > > omit all -i flags. > > > > I have tried all the suggestions listed in the error information, but none > worked. > > > > Does anyone have any suggestion? I would really appreciated it. > > > > Many Thanks > > > > Peng > > -------------------------------------------- > > Peng Liu, PhD Candidate > > > > Institut für Kognitive Neurologie und Demenzforschung (IKND) > > Otto-von-Guericke Universität Magdeburg > > Deutsches Zentrum für Neurodegenerative Erkrankungen e.V. (DZNE) > > > > Leipziger Str. 44| Haus 64| Raum 217 > > 39120 Magdeburg, Deutschland > > > > Email: peng....@med.ovgu.de/peng....@dzne.de > > Phone: +49 391 67 25074 > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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