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Hi everyone,

Suppose I have run Freesurfer with respect to a subject using the T1 image,
and I have gotten the skull-stripped brain image (brain.mgz) in the
<subjectid>/mir directory.

Now I have a non-T1 image of the same subject, say, the (T2)FLAIR series,
and I want to get the corresponding skull-stripped brain image of that
FLAIR series by using some kind of registration. How should I do that?
Please advise. Thank you!

Xiaojiang
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