I think this is a bug. Can you try this version?
https://gate.nmr.mgh.harvard.edu/safelinks/greve/reg-feat2anat
copy it to $FREESURFER_HOME/bin
and run
chmod a+x $FREESURFER_HOME/bin/reg-feat2anat
On 3/31/2020 11:46 AM, Tiffany Bell wrote:
External Email - Use Caution
Hello
I am trying to transform a free surfer segmentation to functional
space using reg-feat2anat but I get the error
tkregister2_cmdl_cmdl: Command not found.
I am running freesufer on linux through a virtual machine. See below
for the full command and output. Any help would be greatly appreciated.
reg-feat2anat --feat LTFI_FEAT_PE_FB_R1/LTFI_02.feat --subject LTFI_02
FeatDir is LTFI_FEAT_PE_FB_R1/LTFI_02.feat
template volume is LTFI_FEAT_PE_FB_R1/LTFI_02.feat/example_func.nii.gz
log file is
LTFI_FEAT_PE_FB_R1/LTFI_02.feat/reg/freesurfer/reg-feat2anat.log
Thu 26 Mar 17:17:56 GMT 2020
/storage/gold/cinn/2013/neuroade/LTFI_Analysis
/usr/local/freesurfer7/freesurfer/bin/reg-feat2anat
--feat LTFI_FEAT_PE_FB_R1/LTFI_02.feat --subject LTFI_02
Linux neurodebian-1022 4.4.0-165-generic #193-Ubuntu SMP Tue Sep 17
17:42:52 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
example_func ras_good_flag 1
-------------------------------------------------------
Initializing exf2anat with header
tkregister2_cmdl_cmdl --targ
/storage/gold/cinn/2013/neuroade/LTFI_Analysis/Freesurfer_output/LTFI_02/mri/brainmask.mgz
--mov LTFI_FEAT_PE_FB_R1/LTFI_02.feat/example_func.nii.gz --reg
LTFI_FEAT_PE_FB_R1/LTFI_02.feat/reg/freesurfer/anat2exf.register.dat.init
--fslregout
LTFI_FEAT_PE_FB_R1/LTFI_02.feat/reg/freesurfer/exf2anat.init.fsl.mat
--regheader --noedit
tkregister2_cmdl_cmdl: Command not found.
Many Thanks
Tiffany
------------------------------------------------------
Tiffany Bell, PhD
Postdoctoral Associate
Cumming School of Medicine
*University of Calgary*
*AlbertaChildren’sHospital*
2888 Shaganappi Trail, NW Calgary, AB T3B 6A8
(E) tiffany.b...@ucalgary.ca <mailto:tiffany.b...@ucalgary.ca>
(T) 403-955-2970
www.kidsmigraine.info <http://www.kidsmigraine.info>
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