oh, then you probably want to use bbreg to register it and mri_vol2surf
to sample it onto the surface. Doug is the expert on this and can
add/correct if this is not the whole story :)
cheers
Bruce
On Fri, 17 Apr 2020, Mason
Wells wrote:
External Email - Use Caution
Hi Bruce,
The only pre-processing I have done is the motion correction, high pass
filtering and distortion correction. So, as far as I know it is still in the
volume and in the original functional space.
Best wishes,
Mason
Mason T Wells, MSc
PhD student
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK
Email: wells...@cardiff.ac.uk
Tel: 02920 879628
Web: Cardiff University webpage
<https://www.cardiff.ac.uk/people/research-students/view/974214->
Mason T Wells, MSc
Myfyriwr PhD
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol
Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU
E-bost: wells...@caerdydd.ac.uk
Ffôn: 02920 879628
On 17/04/2020, 15:11, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Bruce
Fischl" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
fis...@nmr.mgh.harvard.edu> wrote:
Hi Mason
is your filtered_func file already sampled onto the surface or is it a
volume?
cheers
Bruce
On Fri, 17 Apr 2020, Mason Wells wrote:
>
> External Email - Use Caution
>
> Hi all,
>
>
>
> I am trying to use an analysis package that works on surface based data
> (SamSrf). I have ran Feat and have a filtered_func file which is of course
> the motion corrected/unwarped version of my EPI. However, I need some
advice
> on how to get these data onto the Freesurfer surface. I have found this
> page, but I wanted to double check this is the most up-to-date pipeline. On
> the page it suggests using the same DOF as used in Feat, I use BBR so this
> seems a little redundant. Has anyone on these lists got any experience of
> getting filtered_func onto the Freesurfer surface?
>
>
>
> Thanks in advance,
>
> Mason
>
>
>
>
>
> Mason T Wells, MSc
>
> PhD student
>
> School of Optometry and Vision Sciences
>
> & Cardiff University Brain Research
>
> Imaging Centre (CUBRIC), School of Psychology
>
> Cardiff University
>
> Cardiff
>
> CF24 4HQ
>
> UK
>
>
>
> Email: wells...@cardiff.ac.uk
>
> Tel: 02920 879628
>
> Web: Cardiff University webpage
>
> Mason T Wells, MSc
>
> Myfyriwr PhD
>
> Yr Ysgol Optometreg a Gwyddorau’r Golwg
>
> & Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr
Ysgol
> Seicoleg
>
> Prifysgol Caerdydd
>
> Heol Maindy
>
> Caerdydd
>
> CF24 4HQ
>
> DU
>
>
>
> E-bost: wells...@caerdydd.ac.uk
>
> Ffôn: 02920 879628
>
>
>
>
>
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