yes, careg is required. In general you should run things all the way to
the end of recon-all as the surfaces are used to improve the accuracy of
the aseg.
cheers
Bruce
On Sun, 19 Apr 2020, Ерохин Александр wrote:
External Email - Use Caution
Hello together,
Could you please suggest the most effective way (in terms of time) for
computation of statistics on segmented volumes from .nii source file?
So far I went though the following steps:
recon-all -autorecon1 -no-isrunning -subjid test
recon-all -gcareg -no-isrunning -subjid test
recon-all -canorm -no-isrunning -subjid test
And seem to be stuck on -careg as transforms/talairach.m3z is needed to
proceed.
As far as I can tell — there is no way around recon-all -careg which seems
to be the most time consuming in the chain of invocations based on Step-wise
Directives (https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all).
But I might be wrong and hoping for your expertise here.
Many thanks,
Aleksandr Erokhin.
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