Hi Jessica
in general if you specify .nii or .nii.gz as the extension of any output
file we will write it in nifti format. This makes using mri_convert easy:
mri_convert any_volume.mgz any_volume.nii.gz
should work fine
cheers
Bruce
On
Sun, 31 May 2020, Hua, Jessica wrote:
External Email - Use Caution
Hi FreeSurfer experts,
Also in case the code is different, how would I convert my T1.mgz file to a
.nii file to be used in DTI analyses?
Thanks!
Jessica
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Jessica Hua, M.A. Cognitive and Emotional Control Lab
Doctoral Candidate Clinical Psychology
University of Missouri
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