External Email - Use Caution thanks, the subj I sent you the logfile has a cut on the posterior part, I uploaded a similar case 098_S_4275_20181221.tar.gz Is there any way to run gtmseg regardless?
Thanks Am Fr., 5. Juni 2020 um 20:01 Uhr schrieb Douglas N. Greve < dgr...@mgh.harvard.edu>: > Hmmm, not sure what is going on here. I'm guessing that the back of the > head was cut off (or wrapped around). Is that right? I'm not sure why this > would create an error. If you upload one of your subjects, I'll take a > look. See instructions below > > From the linux command line, > Create the file you want to upload, eg, > cd $SUBJECTS_DIR > tar cvfz subject.tar.gz ./subject > Now log into our anonymous FTP site: > ftp surfer.nmr.mgh.harvard.edu > It will ask you for a user name: use "anonymous" (no quotes) > It will ask you for a password: use "anonymous" (no quotes) > cd transfer/incoming > binary > put subject.tar.gz > Send an email that the file has been and the name of the file. > > > On 6/4/2020 9:40 AM, Boris Rauchmann wrote: > > External Email - Use Caution > Please find the logfile attached. > > Thank you > > Am Do., 4. Juni 2020 um 15:18 Uhr schrieb Douglas N. Greve < > dgr...@mgh.harvard.edu>: > >> Can you send the log file? >> >> On 6/4/2020 9:12 AM, Boris Rauchmann wrote: >> >> External Email - Use Caution >> Dear FS experts, >> >> In my dataset I have 4 subjects where the T1 was acquired, planning the >> FOV very close to the occipital lobe. I guess that triggers the error: >> getSignalBehindHead ERROR (no slices behind head) WARNING: only 0 < 7 >> slices behind head! ERROR: xcerebralseg and results in gtmseg exited with >> errors. >> How can I fix this? >> >> Best regards, >> Boris >> >> _______________________________________________ >> Freesurfer mailing >> listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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