External Email - Use Caution Hi,
In this case, there's a list of steps, written by Martin Reuter in one of the previous answers: check that folders exist, are filled with data and reecon-all finished without error check that all folders and readable: (chmod 777 -R) check in the base-tps that all time points are listed correctly check that names have no underscores '_' try re-running -base also: check the names of subjects in the command (recon-all -long ...) A. Le mar. 9 juin 2020, à 11 h 04, COLLEEN PLETCHER < ccpletc...@medicine.wisc.edu> a écrit : > External Email - Use Caution > > Hi, I am not really using any scripts, I am just using the terminal to run > and edit everything. As for switching versions of free surfer, we are > trying to keep the free surfer version consistent for this project since we > have run everything through 6.0 so far. > > I have never had this unmatched error before- only when trying to run my > longitudinal edits through the longitudinal pipeline. I was able to > complete the original longitudinal runs with no problems. > > Thank you for your reply! > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of > hanganu.alexan...@gmail.com <hanganu.alexan...@gmail.com> > *Sent:* Tuesday, June 9, 2020 9:55 AM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* Re: [Freesurfer] Unmatched error > > > External Email - Use Caution > > Hi, > > I also had this error in the past. It would be reasonable to try and log > all the steps now, because I didn't manage to find out where that error was > coming from. In my case - I made adjustments to my own scripts. > > I can take a look at your scripts, because I didn't manage to recreate > that error. > > also - it would be probable better to switch to at least FS 6.1 > > Best, > Alex > > > > Le mar. 9 juin 2020, à 10 h 26, COLLEEN PLETCHER < > ccpletc...@medicine.wisc.edu> a écrit : > > External Email - Use Caution > > Hello, > > I am currently attempting to run a brain through the longitudinal stream > after performing edits on the longitudinal brain, using the command > recon-all -long timepoint1 base -autorecon2-wm -autorecon3. I am getting an > error that says Unmatched ". All of the data for both timepoint 1 and the > base is there and readable. I am using version 6.0. Any advice on how to > fix this problem? > > Thank you! > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ᐧ
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