External Email - Use Caution Hi all, Just following up on this as I've run into the exact same problem. Is there a different recon-all.makefile that should be used for FS 6/6.0.1 ?
Thanks! On Fri, Mar 29, 2019 at 9:28 AM Matthieu VANHOUTTE < matthieuvanhou...@gmail.com> wrote: > External Email - Use Caution > > Dear Freesurfer's experts, > > Havng done multiple types of manual editing in two subjects, I relaunched > the recon-all process (Freesurfer 6.0.1) with the flag "-make all". > > However, during the process, I goth for both subjects the following error > message: > > *make: *** > [/netapp/vol2_agewell/pro/IMAP/imap_mvh/FS6.0.1/awellv1s097/mri/aseg.presurf.mgz] > Error 1* > > > *recon-all -s /netapp/vol2_agewell/pro/IMAP/imap_mvh/FS6.0.1/awellv3s024 > -ccseg ERROR: Flag -ccseg unrecognized.* > > Following the troubleshooting site ( > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TroubleshootingDataV6.0) > I have over-writed the "recon-all.makefile" file since I use the 6.0.1 > version of Freesurfer. > > Thanks for helping. > > Best, > > Matthieu > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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