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Hi freesurfer developers,
I am trying to run mri segstats for multiple subjects but the following
only produces one text file for the first subject. Any idea what I am doing
wrong?
for subj in $(cat sessid.txt); do
mri_segstats --seg
/Users/Desktop/AUT/dti/TBSS_FA/FA/${subj}_FA_skeleton_JHU_wmparc_segmentation.nii.gz
--in /Users/Desktop/AUT/dti/TBSS_FA/origdata/${subj}.nii.gz --ctab
/Users/Desktop/AUT/TBSS_FA/stats/JHU_wmparc_segmentation_ColorLUT.txt
--sum /Users/Desktop/AUT/TBSS_FA/roi/FA_${subj}_M.txt
done
Thank you.
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