Look in the subject/scripts/recon-all.cmd file of one of your subjects.
You will find five mri_surf2volseg commands
Use the 2nd one (the one that creates aparc+aseg.mgz) as your template
and modify it to take your BA annotation and output a "BA+aseg.mgz"
Use the last one ( the one that creates wmparc.mgz) as your template to
create your new wmBA.mgz file, modifying it as needed.
You will need to create a new LUT, but let's do that when you get there
On 2/9/2021 10:26 AM, Vinny K wrote:
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I am using freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551
On Tue, Feb 9, 2021 at 9:55 AM Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
which version of FS are you using?
On 2/5/2021 10:02 PM, Vinny K wrote:
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Hello,
I'd like to obtain white matter parcellations of the Brodmann
areas. I am not certain that the generated wmparc file
from recon-all has this type of parcellation. I was able to
convert Brodmann area label files to mgz format using
mris_label2annot and mri_aparc2aseg commands. How can I obtain
white matter parcellation of the individual Brodmann area volumes?
Thanks,
Vinny
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