External Email - Use Caution Hi liangfeng kuang,
I think FreeSurfer is failing to find your subject as you set the $SUBJECTS_DIR to .../kuang_dev_results but your actual subject is in .../kaung_dev_data/... . Best, Horsng > On Feb 26, 2021, at 10:41 PM, Douglas N. Greve <[email protected]> wrote: > > Not sure, the command line looks correct. Can you run it with -debug as the > first flag? Capture the output in a file (don't take a picture). > > On 2/24/2021 6:14 AM, 况况 wrote: >> External Email - Use Caution >> >> hello, >> >> i downloaded dev version, input >> >> FREESURFER_HOME=/home/siying/sharefolder/freesurfer-linux-ubuntu18_x86_64-dev/freesurfer >> export >> SUBJECTS_DIR=/home/siying/sharefolder/freesurfer-linux-ubuntu18_x86_64-dev/freesurfer/kuang_dev/kuang_dev_results >> source $FREESURFER_HOME/SetUpFreeSurfer.sh >> then run recon-all -s ch2 -i >> /home/siying/sharefolder/freesurfer-linux-ubuntu18_x86_64-dev/freesurfer/kuang_dev/kuang_dev_data/ch2/ch2.nii-all >> –qcache -parallel <>, then and appeared 'ERROR: must specify a subject id', >> what should i do to solve it? >> >> best wishes >> liangfeng kuang >> >> >> >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] <mailto:[email protected]> >> https://secure-web.cisco.com/1Mtv5agylsmpJjy-EPMmhMf67xeqREgBIJNeGflSng929c7KZJNFEVdHh_iV03bWSHj-OwJMNfsc-84cX_tjKa73Nv-HYWB0Dxz2yWMYip97kkuLCvWdW_Nsi2T-ooWlqcKiJ-MaWZ_eNQ4JhH1NHk4A2EKza_Dvq4cmAYAPu2cdSd54D2fiUJB0ddRA5J2UfrjcOKLDh-dT_LHoTz1ljrykHMC4aAzuAqAo2kJAUkyw-u2jHinxY0EbOe9y04WNo1t28NndWw4NQxnNEYDDmCA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> >> <https://secure-web.cisco.com/1Mtv5agylsmpJjy-EPMmhMf67xeqREgBIJNeGflSng929c7KZJNFEVdHh_iV03bWSHj-OwJMNfsc-84cX_tjKa73Nv-HYWB0Dxz2yWMYip97kkuLCvWdW_Nsi2T-ooWlqcKiJ-MaWZ_eNQ4JhH1NHk4A2EKza_Dvq4cmAYAPu2cdSd54D2fiUJB0ddRA5J2UfrjcOKLDh-dT_LHoTz1ljrykHMC4aAzuAqAo2kJAUkyw-u2jHinxY0EbOe9y04WNo1t28NndWw4NQxnNEYDDmCA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > _______________________________________________ > Freesurfer mailing list > [email protected] > https://secure-web.cisco.com/1Mtv5agylsmpJjy-EPMmhMf67xeqREgBIJNeGflSng929c7KZJNFEVdHh_iV03bWSHj-OwJMNfsc-84cX_tjKa73Nv-HYWB0Dxz2yWMYip97kkuLCvWdW_Nsi2T-ooWlqcKiJ-MaWZ_eNQ4JhH1NHk4A2EKza_Dvq4cmAYAPu2cdSd54D2fiUJB0ddRA5J2UfrjcOKLDh-dT_LHoTz1ljrykHMC4aAzuAqAo2kJAUkyw-u2jHinxY0EbOe9y04WNo1t28NndWw4NQxnNEYDDmCA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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