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OK, I will try later. Thanks!


-----原始邮件-----
发件人:"Douglas N. Greve" <[email protected]>
发送时间:2021-03-18 06:03:24 (星期四)
收件人: [email protected]
抄送:
主题: Re: [Freesurfer] Troubleshooting: Soft Failures

The contrast is pretty low (probably due to the high resolution). Maybe try 
version 7 or samseg (in version 7).


On 3/17/2021 2:01 AM, 崔鹏程 wrote:


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Hi Douglas:




   Thanks for your reply.  Please check the attached file for recon-all.log!




Cui

-----原始邮件-----
发件人:"Douglas N. Greve" <[email protected]>
发送时间:2021-03-17 00:04:43 (星期三)
收件人:[email protected]
抄送:
主题: Re: [Freesurfer] Troubleshooting: Soft Failures

Can you send the recon-all log file?


On 3/9/2021 2:06 AM, 崔鹏程 wrote:


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Hi FreeSurfer experts,

    Recently,  I used Fresurfer's recon-all toprocess our own T1 MRI brain 
volumes which is 0.7 m3 isotropic. For most young  brain cases, FS performs 
very well, the segmention is great. But for almost every elderly brain case, 
the segmention is inaccurate visibly. The figure is the same slice of T1 data 
and aseg. mgz , the GM is mislabeled as wm-hypointensities.

    I found some solutions to this problem. But these solutions all require 
manual editing, which will take a long time. Is there a way to automatically 
solve this problem by setting some parameters?

    Thank you for your attention and your help!

Cui


  



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