You can add --aparc+aseg (hit 'c' to toggle on and off), alternatively
You can use tkregsiterfv (same command arguments) but add -aparc+aseg
-seg-outline
You will need to use the lta registration file (not the .dat)
On 3/29/2021 6:13 PM, Nasiriavanaki, Zahra wrote:
Dear Freesurferers,
I have a question and I appreciate it much if you could please reply.
I need to know how to check *subcortical* functional to anatomical
registration. I know for checking the cortical registration I can use
the below command:
tkregister2 --s $subj --mov template.nii.gz --surf --reg
init.register.dof6.dat
Could you please tell me what command should I use to check the
registration in subcortex?
Thanks
MOna
*Zahra (Mona) Nasiriavanaki, M.D.*
Postdoctoral Research Fellow
Department of Psychiatry
Massachusetts General Hospital
149 13th Street, 149-2615
Boston, MA, USA, 02129
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
