External Email - Use Caution Hello FreeSurfer Developers,
I'm attempting to compute cortical thickness and to analyze it between groups. So I perform "recon-all", but rather than using recon-all -all, some problems arise while performing each of the steps in it. These problems are as follwing. 1. -whitesurf process is preceded over smooth2 and inflated2 in recon-all file, really it is not. why? 2. This error first started during -cortribbon process, also occurs in other processes such as -cortparc2, -cortparc3, -hyporelabel, -aparc2aseg, and -wmparc. But these process does not ask for a file called aseg as input if you check it on the homepage. Can you tell me how to fix it? error: mghRead(/media/hwang/Disk1/cp2ANZ/FREESURFER/mri/aseg.mgz, -1): could not open file error: cannot compute vol stats without /media/hwang/Disk1/cp2ANZ/FREESURFER/mri/aseg.mgz Command exited with non-zero status 1 1) FreeSurfer version: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551 2) Platform: Ubuntu release 18.04.1 3) uname -a: Linux LABPC 5.4.0-70-generic #78~18.04.1-Ubuntu SMP Sat Mar 20 14:10:07 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux 4) recon-all.log: see attached Thank you very much. Sincerely, Yoonho -- *Hwang, Yoonho* *Medical Image Processing Laboratory (MIPL),* *Department of Biomedical Engineering, Yonsei University.* *#218 Sanhak-Kwan, 1, Yeonsedae-gil, Heungeop-myeon, Wonju,* *Gangwon-do, 26493, Republic of Korea.* *Office: +82-33-760-2499* *Email: ken.lmsta...@gmail.com <ken.lmsta...@gmail.com>*
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