Try adding a -p as below (-p indicates that it is a patch)
mris_convert -p lh.full.flat.patch.3d flat_lh.gii
On 4/20/2021 2:50 PM, Suzanne Nie wrote:
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Hello Freesurfer Developers,
I'm attempting to create a full surfaces folder in the filestore based
on the example, with flat_lh.gii, inflated_lh.gii, pia_lh.gii,
wm_lh.gii, and those for the right hemisphere in order to use
cortex.quickshow, plt.show, and cortex.webgl.show.
I used cortex.freesurfer.flatten to create files lh.full.flat.patch.3d
and rh.full.flat.patch.3d from lh.full.patch.3d that I created from
making cuts. I want to convert these files to flat_lh.gii, but
mris_conver gives me segmentation fault errors.
mris_convert lh.full.flat.patch.3d flat_lh.gii
ASSERTION FAILED:
/Users/developer/space_freesurfer/build/tulum/trunk/developer-7.1.1/utils/mrisurf_metricProperties.cpp:4323
mris->dist_nsize == 0
ASSERTION FAILED:
/Users/developer/space_freesurfer/build/tulum/trunk/developer-7.1.1/utils/mrisurf_metricProperties.cpp:4323
mris->dist_nsize == 0
Segmentation fault: 11
I was unable to find similar issues. If my goal is to display using
cortex.webgl.show, is creating these files the correct step and if so,
are there any instructions explaining possible steps?
- Freesurfer Version: freesurfer-darwin-macOS-7.1.1-20200811-8b40551
- Platform: macOS Catalina Version 10.15.7
- Darwin Suzannes-MBP 19.6.0 Darwin Kernel Version 19.6.0: Mon Aug 31
22:12:52 PDT 2020; root:xnu-6153.141.2~1/RELEASE_X86_64 x86_64
- recon-all.log attached
Thank you,
Suzanne
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