What is your command line and terminal output?
On 4/24/2021 8:36 PM, Haneen Hakeem wrote:
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*/Hello FreeSurfer Developers,/*
*/
/*
*/I’m attempting to output stat files using “asegstats2table” and
“aparcstats2table” but for some of my subjects I get the following
error when I run the commands: /*
*/
/*
*/ERROR: Cannot find stats file
/apps/freesurfer/7.0.0/freesurfer/subjects/APC011/stats/aseg.stats/*
*/
/*
*/However, when I check the stats file in FreeSurfer output directory,
the stats files are there (including asset.stats). This issue is
recurring with all “asegstats2table” and “aparcstats2table” stat
files. /*
*/
/*
*/1) freesurfer version FreeSurfer 7.0/*
*/2) Platform: Bash remotely through High Performance Computing (HPC)
on a MacOS Mojave/*
*/3) recon all log attached/*
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