If the tkregisterfv command works without the --surf option, then just
use that
On 5/18/2021 12:04 PM, Gabor Perlaki wrote:
External Email - Use Caution
Dear all,
I tried to check the talairach transformation under Freesurfer 7 linux
version (freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551).
However, neither command works as expected.
the command "freeview -v bert/mri/T1.mgz -v
bert/mri/brainmask.mgz:reg=bert/mri/transforms/talairach.xfm" gives
the following message in the terminal: "Not reading in xfm fileinfo".
Both T1 and brainmask is loaded, but the transformation seems to be
not applied.
the command "tkregisterfv --s bert --fstal --surf orig" works only
without the flag --surf.
the command "tkregister2 --s bert --fstal" gives the following messages:
Tcl_Init failed: Can't find a usable init.tcl in the following
directories:
/usr/pubsw/packages/tcltktixblt/current/lib/tcl8.4
This probably means that Tcl wasn't installed properly.
Tk_Init failed: invalid command name "tcl_findLibrary"
The green border is not shown, only the target and movable images are
visible.
Any idea how to fix this?
Best,
Gabor
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