Hi all,
I'm running TRACULA preprocessing in FreeSurfer 6.0 and have run into an error.
It looks like it might be caused by TRACULA calling mri_convert with the input
as the whole DICOM root directory, as opposed to an individual file. I'm not
sure what's going wrong that leads to that happening though. I'll paste my
command, error file, config file, and log file below. Thank you for any help!
Best,
John
Command:
trac-all -prep -c
/autofs/cluster/bang/TAW_New/scripts/resources/tracula_test_config.txt
trac-all.error:
------------------------------
SUBJECT 180515_4PR00065
DATE Thu Sep 16 13:30:13 EDT 2021
USER jj1006
HOST erso.nmr.mgh.harvard.edu
PROCESSOR x86_64
OS Linux
Linux erso.nmr.mgh.harvard.edu 4.18.0-310.el8.x86_64 #1 SMP Tue Jun 8 00:24:50
UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
$Id: trac-preproc,v 1.54.2.2 2016/12/27 16:47:14 zkaufman Exp $
/autofs/cluster/freesurfer/centos6_x86_64/stable6_0_0/bin/trac-preproc
PWD /autofs/cluster/bang/TAW_New/scripts/resources
CMD mri_convert /autofs/cluster/bang/TAW_New/data/
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/b0mag.nii.gz
Config File:
setenv SUBJECTS_DIR /autofs/cluster/bang/TAW_New/recons/default
set dtroot = /autofs/cluster/bang/TAW_New/tracula
set dcmroot = /autofs/cluster/bang/TAW_New/data
set epifactor = 128
set echospacing = 0.69
set dob0 = 2
set interreg = 4
set subjlist = ( 180515_4PR00065 180515_4PR00065 )
set dcmlist = (
180515_4PR00065/DICOMs/028_dMRI_dir98_AP/MR.1.3.12.2.1107.5.2.43.67026.2018051512252089486946407
180515_4PR00065/DICOMs/031_dMRI_dir98_PA/MR.1.3.12.2.1107.5.2.43.67026.2018051512284637673973138
)
set pedir = ( AP PA )
trac-all.log:
Thu Sep 16 13:13:39 EDT 2021
/autofs/cluster/bang/TAW_New/scripts/resources
/autofs/cluster/freesurfer/centos6_x86_64/stable6_0_0/bin/trac-all
-prep -c /autofs/cluster/bang/TAW_New/scripts/resources/tracula_test_config.txt
Subject 180515_4PR00065
SUBJECTS_DIR /autofs/cluster/bang/TAW_New/recons/default
FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/stable6_0_0
Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/stable6_0_0
build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
jj1006
erso.nmr.mgh.harvard.edu
Linux erso.nmr.mgh.harvard.edu 4.18.0-310.el8.x86_64 #1 SMP Tue Jun 8 00:24:50
UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
cputime unlimited
filesize unlimited
datasize unlimited
stacksize unlimited
coredumpsize 0 kbytes
memoryuse unlimited
vmemoryuse unlimited
descriptors 131070
memorylocked 64 kbytes
maxproc 62634
maxlocks unlimited
maxsignal 62634
maxmessage 819200
maxnice 0
maxrtprio 0
maxrttime unlimited
total used free shared buff/cache available
Mem: 16101348 5617832 4625196 263964 5858320 9883424
Swap: 16777212 4388 16772824
########################################
Program versions:
$Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $
mri_convert.bin --all-info
ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion:
$Name: stable6 $ TimeStamp: 2021/09/16-17:13:39-GMT BuildTimeStamp: Jan 18
2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp
$ User: jj1006 Machine: erso.nmr.mgh.harvard.edu Platform: Linux
PlatformVersion: 4.18.0-310.el8.x86_64 CompilerName: GCC CompilerVersion:
40400
FLIRT version 6.0
$Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $
$Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $
ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name:
stable6 $ TimeStamp: 2021/09/16-17:13:39-GMT BuildTimeStamp: Jan 18 2017
16:38:58 CVS: User: jj1006 Machine: erso.nmr.mgh.harvard.edu Platform:
Linux PlatformVersion: 4.18.0-310.el8.x86_64 CompilerName: GCC
CompilerVersion: 40400
ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name:
stable6 $ TimeStamp: 2021/09/16-17:13:40-GMT BuildTimeStamp: Jan 18 2017
16:38:58 CVS: User: jj1006 Machine: erso.nmr.mgh.harvard.edu Platform:
Linux PlatformVersion: 4.18.0-310.el8.x86_64 CompilerName: GCC
CompilerVersion: 40400
ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name:
$ TimeStamp: 2021/09/16-17:13:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58
CVS: User: jj1006 Machine: erso.nmr.mgh.harvard.edu Platform: Linux
PlatformVersion: 4.18.0-310.el8.x86_64 CompilerName: GCC CompilerVersion:
40400
ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion:
$Name: stable6 $ TimeStamp: 2021/09/16-17:13:40-GMT BuildTimeStamp: Jan 18
2017 16:38:58 CVS: User: jj1006 Machine: erso.nmr.mgh.harvard.edu
Platform: Linux PlatformVersion: 4.18.0-310.el8.x86_64 CompilerName: GCC
CompilerVersion: 40400
ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion:
$Name: stable6 $ TimeStamp: 2021/09/16-17:13:41-GMT BuildTimeStamp: Jan 18
2017 16:38:58 CVS: User: jj1006 Machine: erso.nmr.mgh.harvard.edu
Platform: Linux PlatformVersion: 4.18.0-310.el8.x86_64 CompilerName: GCC
CompilerVersion: 40400
ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name:
$ TimeStamp: 2021/09/16-17:13:41-GMT BuildTimeStamp: Jan 18 2017 16:38:58
CVS: User: jj1006 Machine: erso.nmr.mgh.harvard.edu Platform: Linux
PlatformVersion: 4.18.0-310.el8.x86_64 CompilerName: GCC CompilerVersion:
40400
New invocation of trac-preproc
jj1006
erso.nmr.mgh.harvard.edu
Linux erso.nmr.mgh.harvard.edu 4.18.0-310.el8.x86_64 #1 SMP Tue Jun 8 00:24:50
UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
cputime unlimited
filesize unlimited
datasize unlimited
stacksize unlimited
coredumpsize 0 kbytes
memoryuse unlimited
vmemoryuse unlimited
descriptors 131070
memorylocked 64 kbytes
maxproc 62634
maxlocks unlimited
maxsignal 62634
maxmessage 819200
maxnice 0
maxrtprio 0
maxrttime unlimited
total used free shared buff/cache available
Mem: 16101348 5661112 4556004 263964 5884232 9840152
Swap: 16777212 4388 16772824
#-------------------------------------
/autofs/cluster/freesurfer/centos6_x86_64/stable6_0_0/bin/trac-preproc
#-------------------------------------
#@# Image corrections Thu Sep 16 13:13:41 EDT 2021
mri_convert --bvec-voxel
/autofs/cluster/bang/TAW_New/data/180515_4PR00065/DICOMs/028_dMRI_dir98_AP/MR.1.3.12.2.1107.5.2.43.67026.2018051512252089486946407
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.nii.gz
mri_convert.bin --bvec-voxel
/autofs/cluster/bang/TAW_New/data/180515_4PR00065/DICOMs/028_dMRI_dir98_AP/MR.1.3.12.2.1107.5.2.43.67026.2018051512252089486946407
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.nii.gz
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from
/autofs/cluster/bang/TAW_New/data/180515_4PR00065/DICOMs/028_dMRI_dir98_AP/MR.1.3.12.2.1107.5.2.43.67026.2018051512252089486946407...
Getting Series No
INFO: Found 101 files in
/autofs/cluster/bang/TAW_New/data/180515_4PR00065/DICOMs/028_dMRI_dir98_AP
INFO: Scanning for Series Number 28
Scanning Directory
INFO: found 99 files in series
INFO: loading series header info.
RunNo = 27
WARNING: Run 1 appears to be truncated
Files Found: 99, Files Expected (lRep+1): 1
FileName
/autofs/cluster/bang/TAW_New/data/180515_4PR00065/DICOMs/028_dMRI_dir98_AP/MR.1.3.12.2.1107.5.2.43.67026.2018051512220971428016067
Identification
NumarisVer syngo MR E11
ScannerModel Prisma_fit
PatientName 180515_4PR00065
Date and time
StudyDate 20180515
StudyTime 114840.347000
SeriesTime 122239.413000
AcqTime 122131.110000
Acquisition parameters
PulseSeq ep_b5#1
Protocol dMRI_dir98_AP
PhEncDir COL
EchoNo 1
FlipAngle 78
EchoTime 89.2
InversionTime -1
RepetitionTime 3230
PhEncFOV 210
ReadoutFOV 210
Image information
RunNo 27
SeriesNo 28
ImageNo 1
NImageRows 1400
NImageCols 1400
NFrames 99
SliceArraylSize 92
IsMosaic 1
ImgPos 1002.7822 1063.1628 325.3363
VolRes 1.5000 1.5000 1.5000
VolDim 140 140 92
Vc -0.9990 -0.0444 -0.0029
Vr 0.0426 -0.9342 -0.3543
Vs 0.0130 -0.3541 0.9351
VolCenter 0.0000 0.0000 0.0000
TransferSyntaxUID 1.2.840.10008.1.2.1
INFO: sorting.
INFO: (140 140 92), nframes = 99, ismosaic=1
sdfi->UseSliceScaleFactor 0
datatype = 4, short=4, float=3
Could not parse NUMARIS version string syngo MR E11
found in dicom tag 18,1020 (len = 3 != 6)
Repetition Time = 3230, TR = 3230 ms
PE Dir COL COL
AutoAlign matrix detected
AutoAlign Matrix ---------------------
1.00000 0.00000 0.00000 0.00000;
0.00000 1.00000 0.00000 0.00000;
0.00000 0.00000 1.00000 0.00000;
0.00000 0.00000 0.00000 1.00000;
FileName
/autofs/cluster/bang/TAW_New/data/180515_4PR00065/DICOMs/028_dMRI_dir98_AP/MR.1.3.12.2.1107.5.2.43.67026.2018051512220971428016067
Identification
NumarisVer syngo MR E11
ScannerModel Prisma_fit
PatientName 180515_4PR00065
Date and time
StudyDate 20180515
StudyTime 114840.347000
SeriesTime 122239.413000
AcqTime 122131.110000
Acquisition parameters
PulseSeq ep_b5#1
Protocol dMRI_dir98_AP
PhEncDir COL
EchoNo 1
FlipAngle 78
EchoTime 89.2
InversionTime -1
RepetitionTime 3230
PhEncFOV 210
ReadoutFOV 210
Image information
RunNo 27
SeriesNo 28
ImageNo 1
NImageRows 1400
NImageCols 1400
NFrames 99
SliceArraylSize 92
IsMosaic 1
ImgPos 98.9473 138.4093 -12.2484
VolRes 1.5000 1.5000 1.5000
VolDim 140 140 92
Vc -0.9990 -0.0444 -0.0029
Vr 0.0426 -0.9342 -0.3543
Vs 0.0130 -0.3541 0.9351
VolCenter -0.5800 11.2260 14.7653
TransferSyntaxUID 1.2.840.10008.1.2.1
UseSliceScaleFactor 0 (slice 0: 1)
IsDWI = 1
sagrev = 0, correv =0, trarev = 0
Vs = 0.0130269 -0.3541 0.935117
INFO: no Siemens slice order reversal detected (good!).
TR=3230.00, TE=89.20, TI=-1.00, flip angle=78.00
i_ras = (-0.999009, -0.0444233, -0.00290475)
j_ras = (0.0425695, -0.934152, -0.354328)
k_ras = (0.0130269, -0.3541, 0.935117)
writing to
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.nii.gz...
Saving bvals and bvecs
mv -f
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.voxel_space.bvecs
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.bvecs
mri_probedicom --i
/autofs/cluster/bang/TAW_New/data/180515_4PR00065/DICOMs/028_dMRI_dir98_AP/MR.1.3.12.2.1107.5.2.43.67026.2018051512252089486946407
> /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dcminfo.dat
mv -f /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/bvecs.tmp
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.bvecs
mv -f /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/bvals.tmp
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.bvals
orientLAS
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.nii.gz
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig_las.nii.gz
INFO: input image orientation is LPS
INFO: input image determinant is 3.375
mri_convert -oni 140 -onj 140 -onk 92 -oid -0.999009 -0.0444233 -0.00290475
-ojd -0.0425695 0.934152 0.354328 -okd 0.0130269 -0.3541 0.935117 -oc -0.643818
12.6272 15.2968 -rt nearest
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.nii.gz
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig_las.nii.gz
mri_convert.bin -oni 140 -onj 140 -onk 92 -oid -0.999009 -0.0444233 -0.00290475
-ojd -0.0425695 0.934152 0.354328 -okd 0.0130269 -0.3541 0.935117 -oc -0.643818
12.6272 15.2968 -rt nearest
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.nii.gz
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig_las.nii.gz
normalizing out_i_direction: (-0.999009, -0.0444233, -0.00290475) ->
(-0.999009, -0.0444233, -0.00290475)
normalizing out_j_direction: (-0.0425695, 0.934152, 0.354328) -> (-0.0425695,
0.934152, 0.354328)
normalizing out_k_direction: (0.0130269, -0.3541, 0.935117) -> (0.0130269,
-0.3541, 0.935117)
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.nii.gz...
TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.999009, -0.0444233, -0.00290475)
j_ras = (0.0425695, -0.934152, -0.354328)
k_ras = (0.0130269, -0.3541, 0.935117)
Reslicing using nearest
writing to
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig_las.nii.gz...
INFO: found
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.bvals,
copying
INFO: found
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig.bvecs,
converting to LAS
mv -f
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig_las.bvecs
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/bvecs
mv -f
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig_las.bvals
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/bvals
eddy_correct
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_orig_las.nii.gz
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi.nii.gz 0
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0000
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0001
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0002
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0003
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0004
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0005
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0006
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0007
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0008
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0009
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0010
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0011
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0012
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0013
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0014
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0015
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0016
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0017
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0018
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0019
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0020
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0021
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0022
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0023
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0024
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0025
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0026
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0027
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0028
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0029
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0030
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processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0032
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processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0045
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0046
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0047
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0048
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processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0052
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processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0055
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0056
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0057
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0058
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0059
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0060
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0061
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0062
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0063
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0064
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0065
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0066
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0067
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0068
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0069
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0070
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0071
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0072
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0073
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0074
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0075
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0076
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0077
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0078
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0079
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0080
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0081
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0082
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0083
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0084
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0085
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0086
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0087
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0088
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0089
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0090
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0091
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0092
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0093
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0094
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0095
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0096
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0097
processing /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_tmp0098
mv -f /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/bvecs
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/bvecs.norot
xfmrot /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi.ecclog
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/bvecs.norot
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/bvecs
mv -f /autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi.nii.gz
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/dwi_eddy.nii.gz
mri_convert /autofs/cluster/bang/TAW_New/data/
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/b0mag.nii.gz
mri_convert.bin /autofs/cluster/bang/TAW_New/data/
/autofs/cluster/bang/TAW_New/tracula/180515_4PR00065/dmri/b0mag.nii.gz
corRead(): can't open file /autofs/cluster/bang/TAW_New/data/COR-.info
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /autofs/cluster/bang/TAW_New/data/...
Linux erso.nmr.mgh.harvard.edu 4.18.0-310.el8.x86_64 #1 SMP Tue Jun 8 00:24:50
UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS at Thu Sep 16 13:30:13 EDT 2021
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