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Hello FreeSurfer Developers,
Thank you for your work !
I am trying to segment .nii images with FS, using an ubuntu shell in Windows
10. When I run the command "recon-all" I receive the Error message that the
file "exists but is not readable". So I tried converting the file with
mri_convert but the following error appears: "niiRead(): error opening file".
I tried selecting several different .nii files from different subjects but the
same errors appear, I think it is unlikely that all files are corrupted: what
may be the cause?
I am new to Freesurfer and I apologize if my question is naive but I cannot
find a solution in any of the online resources.
Thank you very much for your time!
Best regards.
________
$ recon-all -s S001 -i
/usr/local/freesurfer/7-dev/ws44891-153636-00001-00192-1.nii
ERROR: /usr/local/freesurfer/7-dev/ws44891-153636-00001-00192-1.nii exists but
is not readable
$ mri_convert /usr/local/freesurfer/7-dev/ws44891-153636-00001-00192-1.nii
S001/mri/orig/001.mgz
ERROR: niiRead(): error opening file
/usr/local/freesurfer/7-dev/ws44891-153636-00001-00192-1.nii
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