External Email - Use Caution Hello,
Thanks a lot! When I do things like this, I am able to run freeview from the terminal and the nii file loads without any issue! When I run Freeview.app, by clicking on it in the mac os GUI, it crashes when I try to load the nii file. So that it mean that I always have to start it from the terminal? Here is my sw_vers: ProductName: macOS ProductVersion: 11.6 BuildVersion: 20G165 Thank you! Best, Nikolai On Mon, Nov 8, 2021 at 2:55 PM fsbuild <[email protected]> wrote: > Hello Nikolai, > > You could let us know what version of MacOS you are running, e.g., > $ sw_vers > ProductName: Mac OS X > ProductVersion: 10.15.7 > BuildVersion: 19H1419 > > I would try setting the environment variable FS_LICENSE to the absolute > path of your license.txt file, e.g, copy it to your home directory (making > up this example path /Users/nikolai/license.txt), and then (in sh or zsh), > > $ export FS_LICENSE=/Users/nikolai/license.txt > > … check you can read the file ... > $ cat $FS_LICENSE > <output deleted> > > If you used the Mac 7.2.0 .pkg file to install freesurfer ( > https://secure-web.cisco.com/1BVLBbSmvJ_cFCa7h9JzJU0KLFYwS3ZIYYb49dF7bU_pdGXW-bf7SFChujBxDBKzL6ljOjnDwhllvLeI9Tf7qHYBOuH9OnuKvTf5z4HdBf2I-i7l8ra72oSypA3FLwB-lQ7qiIfs7UAQZgpWXGNXmS3As2C-yzjUGQjUQZpZ05OA_NDpQlcQjfKvlPqrCb6KdwlOpRhWm4PmXOF7hHV1e41W8q_buYV-RB0k9bfTeHbha0cPZx_IC_7Dh97DDWVHc2PoB-SdZ635Aez2tAWz80Q/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.2.0%2Ffreesurfer-darwin-macOS-7.2.0.pkg), > then it should be installed under /Applications/freesurfer/7.2.0. If your > version of MacOS is too old, I believe the installer will tell you and > refuse to install freesurfer. If it did install it then you should see the > following, > > … set FREESURFER_HOME ... > $ export FREESURFER_HOME=/Applications/freesurfer/7.2.0 > > … source setup file ... > $ source $FREESURFER_HOME/SetUpFreeSurfer.sh > -------- freesurfer-darwin-macOS-7.2.0-20210713-aa8f76b -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /Applications/freesurfer/7.2.0 > FSFAST_HOME /Applications/freesurfer/7..2.0/fsfast > FSF_OUTPUT_FORMAT nii.gz > SUBJECTS_DIR /Applications/freesurfer/7.2.0/subjects > MNI_DIR /Applications/freesurfer/7.2.0/mni > > $ which freeview > /Applications/freesurfer/7.2.0/bin/freeview > > … try running freeview w/o any arguments to see if an empty window will > open … > $ freeview > > If you get an error notification, then try to capture the error report > (core dump). You can send it to me directly if you like as it’s kind of > long to post to the list. > > - R. > > On Nov 8, 2021, at 14:02, Nikolai Chapochnikov <[email protected]> > wrote: > > External Email - Use Caution > > Hello, > > Thank you for your help! > > I have an old intel mac (not M1). I allowed Freeview to access all my > disk. I also put the license file and run the export commands (but not sure > if it useful to run freeview.app?). But still it crashes when I try to open > a volume file... Any other suggestions? > > Thank you very much! > > Best wishes, > Nikolai > > On Sat, Nov 6, 2021 at 10:56 PM fsbuild <[email protected]> wrote: > >> Hello Nikolai, >> >> A posting from September lists some things you can try, >> >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1eABJsnVWaIdxp8kOkH9ueRyVjRa1Y4oiXAePJ9NYedQ6AERsDgaDsYxkH06Gez_3O0n8SIJBJGHPWknWDjNPMJ31ntijhdyjvNVtOPe7LWZGVufslapkYll9uLJs6wnPEQIYvUTaZqLaZHl2LsonfrxILySWp_XrXVzUIJOFplNyT2NyYyB-SGza7kfT27ujlF4PsliGGkxpbvGf1xN5y4EIhHl-Vjja1UFGW3GTJwUJ_RE0jOIetpwdLryJ4mC6HPVUiWjyVGVQpKQt68r5jA/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg70979.html >> <https://secure-web.cisco.com/1biVohD6aJIQu7a7KznIsPu7a4oDOvTfC-dz6iqiVW8p-Y75m-83W8NhpMq4RErMnDIRVF_cq3nQn2-sArnvyLR37kntuTIYdopLzP0sTNxWJR5JyLAuMQUxe_ck8XeGDZXhzPMiWDrwxovkV-cv20uQmrGpUSSdffiNuTwEfGoW0CqfrKxJGn4eGAQpnqLENbuyw6E3ioZaqicNT17D_e5krFpe71PFgK-uZAigErCxbLNbbOG2XqCQ-9pvFUFu3/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg70979.html> >> >> I would try getting a new license file first. I will send the text to >> your email as well. >> >> - R. >> >> >> >> On Nov 6, 2021, at 16:30, Nikolai Chapochnikov <[email protected]> >> wrote: >> >> External Email - Use Caution >> >> Hello, >> >> I just installed freesurfer 7.2.0 on mac os 11.6 using the pkg. Freeview >> opens, but as soon as I select a nii file to load, it crashes. >> Here is the report I get: >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1A_49Z-Djgmsscz1CBJqtKMervY2coUK339NlZ1LgUe5Q3fRIrks08l6Jl4cTPXzYXZkq76S3rMG9qD-3yZzCGgxK256R8eyeIWfOG80ak8X9sOKSE3a0RItVj28LF6IRcQvin5qLhGbch-ZGQnEaI215WiNlwA6qN68tbDFQZ3xg56dPsuJWdNAvhYiSnYKWk16S6_qnQpPcT029A5d8XBqsWZdrSKykIIhZsYeG7W3u5Nlnt7Ao1POyjy_6VegtxOFWAPDyHfoYW1UH2zlAlg/https%3A%2F%2Fgist.github.com%2Fchapochn%2Fd6a526ff19c511e7f4b99e8ebbbf1985 >> <https://secure-web.cisco.com/1S_Xfvu-lNCy7GOzAyxCVPdF0cy5djt33DYm0S7sznuCGb1FT-JzZkN7fZjYwmu_dNJMiOeXhzcuUgyegxVs-i_zmSciy4n1_vaf4Wy10LWVECnT-DeInJ6sWPm_dUGkoKoYCpSzOxfh2waVALKuZYFnbQkhp8MVOMfdLxG92PP0t19vPL9QgofhnqjzrW0qHy35c6Y25CN8PDdIKxJppagDWDDrqX7ctm9Pj7mJrVN9UjfwZMKnn5luXexqvtWFbgn-CLuVa6O1zYvcd0WZzOQ/https%3A%2F%2Fgist.github.com%2Fchapochn%2Fd6a526ff19c511e7f4b99e8ebbbf1985> >> >> Could someone please help with this? >> >> Thank you very much! >> Nikolai >> >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/10i_Ol_qF3tzm5tBSROPoQmlVHohJN3aNlHFH5Tl3Qms5gg3vAHIL9ogj5QRL3DQ5duzUv_6roOgz8ZVJvJyTi8vjYslAPrvS8Yu_Dz7181fZEg6iNrSRmrzzEh2rDupdHJstFeEcBcrMi60L3K1Lv3HLsQM8GC_7J-Clsr7QHb3JWDalkm1vRbL19IYMDx0M5VFCOmtWTp-JsiNdPygVpz5OJsrZ2k6J-VwLRG3Q7Gx9WXBBLOHvr_XZAoWQ4wByduDF704PNJ5KW1pQKHZdxw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> <https://secure-web.cisco.com/1SrNNSsiS8bpquR5YRS1uzf0y-LNqn8EcYShA6SGLBAKB_qO-HnGTdW2EsW6Mr5z2wjUw35-riUB8CwAuI6-XaRsg9uosIUIYExIUA_DHIMxR_PEVSF71LdepqoCREWrf62smA-m3JhcaaejM_NInudK8xMnVWoH4sMbWN0uJq-qJtlERQmUxMJviGoGB0KI0TLwjPGXKPvi4jawj_Z74jqtjNgDcjjbsl9dBiGBVtvDq5hXKCc2qJWWWALu2CaGm/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >> >> >> _______________________________________________ > Freesurfer mailing list > [email protected] > https://secure-web.cisco.com/10i_Ol_qF3tzm5tBSROPoQmlVHohJN3aNlHFH5Tl3Qms5gg3vAHIL9ogj5QRL3DQ5duzUv_6roOgz8ZVJvJyTi8vjYslAPrvS8Yu_Dz7181fZEg6iNrSRmrzzEh2rDupdHJstFeEcBcrMi60L3K1Lv3HLsQM8GC_7J-Clsr7QHb3JWDalkm1vRbL19IYMDx0M5VFCOmtWTp-JsiNdPygVpz5OJsrZ2k6J-VwLRG3Q7Gx9WXBBLOHvr_XZAoWQ4wByduDF704PNJ5KW1pQKHZdxw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > > >
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