I'm not sure what is happening. Does it work without the parallel flag?
btw, you are not using 7.2
here's your build: build-stamp.txt:
freesurfer-linux-ubuntu18_x86_64-dev-20210824-e101185
On 11/16/2021 4:26 PM, Peled, Noam wrote:
Dear Freesurfer group,
I was running recon-all (Freesurfer 7.2 on Ubuntu) and received the
following error:
“
mris_fix_topology -mgz -sphere qsphere.nofix -inflated inflated.nofix
-orig orig.nofix -out orig.premesh -ga -seed 1234 UC07 rh
Waiting for PID 6337 of (6337 6340) to complete...
Waiting for PID 6340 of (6337 6340) to complete...
/home/basuia/Documents/mmvt_root/freesurfer/bin/reconbatchjobs: line
77: 6340 Segmentation fault (core dumped) exec $JOB >> $LOG 2>&1
PIDs (6337 6340) completed and logs appended.
“
Please find the log file attached.
Any idea what is the problem?
Thanks,
Noam
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