External Email - Use Caution I'm attempting to use fspalm ( https://secure-web.cisco.com/1zRz_KYc-Z02lCLizE3BUB2We3AfuiVlIxzRg5VijNOs5jbFNTJTdsU98fKu8B4Ug7TYv7ChunsJYQqBLlivaVExtNZMsiujGamhHbMgVd5e8gMBRoDT5FDcSuW2fWov5lk4ByGZ28rIRaQ2HnRlFnvMIEZWpxhLBplju5VXNTUE5gLBwoGTwTJj9fCbXxDadtapyfu50b8RAye6odptf1c7yn2K_LGrMaJ9tv3bJDj8P-w8vi4n7lI1Z_d0u2EqR5vhiAvppazpxbCNrT2H3h5DS90I6KPrBRsv3CtUmUcP5RcwsRYFWUuX4zf2N-EK6_-z1hnKUywQBQlL_S0WNjA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsPalm%3Fhighlight%3D%2528PALM%2529), and I copied fspalm, mri_volcluster, and mri_surfcluster into $FREESURFER_HOME/bin. But get error: MRISread(): could not open file mri_surfcluster: could not read surface /home/lipalab/Desktop/hwj/GLM/children/fsaverage/surf/lh.white---------------------------------------------------- Reading source surface /home/lipalab/Desktop/hwj/GLM/children/fsaverage/surf/lh.white And after I copy mri_volcluster, and mri_surfcluster into $FREESURFER_HOME/bin, I got this error when I run mri_glmfit-sim. I wonder if it's because of my freesurfer's version? And if it works for me if I get a newer version, will it be ok if I recon-all, mri_glm-stim, mri_glmfit-sim on 6.0v and do the fspalm on 7.2v within one project?
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, I've attached the fspalm.log and in case it's of any use. 1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a 2) Platform: Ubuntu 18.04 LTS(Bionic Beaver) 3) uname -a: Linux lipalab-Precision-5820-Tower 5.4.0-100-generic #113~18.04.1-Ubuntu SMP Mon Feb 7 15:02:59 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux 4) fspalm.log and perm.th40.abs.mri_glmfit-sim.log: see attached
fspalm.log
Description: Binary data
perm.th40.abs.mri_glmfit-sim.log
Description: Binary data
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.