why are you using white.deformed? If you just use white (or don't spec)
it should work
On 5/23/2022 8:12 AM, 정범석 wrote:
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Dear Freesurfer experts,
I'm running GenericfMRIVolumeProcessingPipeline of HCP pipeline in
longitudinal dataset(T1w and fMRI).
After running longitudinal pipeline in freesurfer, I'd like to run
script like below.
bbregister --s ses-01 --mov Scout_gdc_undistorted2T1w_init.nii.gz
--surf white.deformed --init-reg ./mri/transforms/eye.dat --bold --reg
./rfMRI_REST1_PA_fmap/DistortionCorrectionAndEPIToT1wReg_FLIRTBBRAndFreeSurferBBRbased/EPItoT1w.dat
--6 --o
./rfMRI_REST1_PA_fmap/DistortionCorrectionAndEPIToT1wReg_FLIRTBBRAndFreeSurferBBRbased/Scout_gdc_undistorted2T1w.nii.gz
However, "white.deformed" file in surf directory is not found in .long
directory but in cross-section one.
When I use "white.deformed" file in cross-section directory, an error
message was occurred "
ERROR: number of vertices in ./surf/lh.thickness does not match
surface (132608,133203)"
How to create white.deformed file, appropriately, in the line of the
longitudinal pipeline?
Bumseok
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