External Email - Use Caution Are there special flags. There are differences between autorecon1 for both pipeline. Does 7.2 update some of the files like for instance the T1.mgz do to differences in the normalizations.
On Sun, Jun 19, 2022, 3:55 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > You should be able to run 7.2 on top of the 5.3 and at will take all your > edits (make a copy of your 5.3 data first:) > > > On 6/14/2022 5:26 PM, Aaron Tanenbaum wrote: > > External Email - Use Caution > Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of scans > to do. I see that you can give freesurfer a brainmask. I was thinking of > giving freesurfer a brainmask from the previous from 5.3 to 7.1. Is this a > wise idea? Do you have any objections? > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/16UJfiN-oybLEPTjfQtzd784e8KzTazVOL_oFmv5VAYJO0ZGHj5B86GZi8IHjJyaeuQzbTXMWXWz27I2k3p3x7J78AINvo036QSiIerDbSqRvZGEsTi8ccjxvIqwE4qePmvzg4Vm6r9yfNZcPd7g0GIqEPLyXzMyMk-Zuw0T_oljT89J3zqPGtCqE74Dy2yzH43Jc3FACxe4h67zoWZdTtmuZx_SPssrzAm86pElQhJmrety0k8K1ii0svdagcBAj-zlE3N0LVFAfCOWlr-c3Ye16SvP2lnBBoArQl9-mth2fq9qg_d9gtB-lWvndwdLeGTTRE9XtUYdyEPS60gteBQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1CUE98fgtNp0aXzXYeHf4sOHFOCAi_kbMMvqPpy-TX6wgSrOTvm3ew1P7IPrF5gHJmcGmXavgwCL4pNUrXna75M005RAibYlaPX9Gc0Ngd1h7YmhTeZqRBEHjG76O3j3qOOuNPwPIL3MWV5RMCYB_hJN-H4VX9I8rzWa867kwluBvSOjeemxD185d7R4DYV3Gz6FTGNGDCBWdC_D6-qCNB11FH98M3TLG-heWUJFu205KjqJwGjfXx_wG7_FdtfhU9QUMYoY8nvknytxHYuF22q6hpB_BY6esjkor4jC3n64JUfdPSNvtkK7rHBGd54fJC4R_4yFFAgP12EWlsL7WDg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1CUE98fgtNp0aXzXYeHf4sOHFOCAi_kbMMvqPpy-TX6wgSrOTvm3ew1P7IPrF5gHJmcGmXavgwCL4pNUrXna75M005RAibYlaPX9Gc0Ngd1h7YmhTeZqRBEHjG76O3j3qOOuNPwPIL3MWV5RMCYB_hJN-H4VX9I8rzWa867kwluBvSOjeemxD185d7R4DYV3Gz6FTGNGDCBWdC_D6-qCNB11FH98M3TLG-heWUJFu205KjqJwGjfXx_wG7_FdtfhU9QUMYoY8nvknytxHYuF22q6hpB_BY6esjkor4jC3n64JUfdPSNvtkK7rHBGd54fJC4R_4yFFAgP12EWlsL7WDg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
