Have you seen this page?
https://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems
On 7/7/2022 12:18 PM, Yiyu wrote:
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Thank you, Bruce
If possible, I would like to transform an individual coordinate
(x,y,z) from FreeSurfer space to the native space.
Yiyu
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*From: *Fischl, Bruce <mailto:bfis...@mgh.harvard.edu>
*Sent: *Thursday, July 7, 2022 11:26 AM
*To: *Freesurfer support list <mailto:freesurfer@nmr.mgh.harvard.edu>
*Subject: *Re: [Freesurfer] Convert coordinates from FreeSurfer space
to Native space
Hi Yiyu
Can you clarify what you are trying to do? Take an individual
coordinate or list of them and transform them? Or transform an entire
volume? And what kind of coordinates do you want at the end? Voxel
indices? RAS?
Cheers
Bruce
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Yi-Yu Chou
*Sent:* Wednesday, July 6, 2022 9:44 PM
*To:* Freesurfer support list <Freesurfer@nmr.mgh.harvard.edu>
*Subject:* [Freesurfer] Convert coordinates from FreeSurfer space to
Native space
* External Email - Use Caution *
Dear FreeSurfer experts:
I wonder if there is a command to convert coordinates from FreeSurfer
space to the native space.
Thanks in advance !
Yiyu
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