Dear Makenna (and rest of users) Thanks for spotting this bug, and for bearing with us while we transition to the new, Matlab-free code.
Renaming should be fine for now but we’ll certainly fix this on our end ASAP. Kind regards, Juan Eugenio Iglesias http://www.jeiglesias.com On Jul 28, 2022, at 18:15, Makenna B McGill <makennamcg...@utexas.edu<mailto:makennamcg...@utexas.edu>> wrote: Hi FreeSurfer Developers, I'm trying to run TRACULA in FreeSurfer v7.3 on OS Monterey. I was unable to download R2014b Runtime on my newer OS, so instead of the segmentThalamicNuclei.sh script, I tried running the newer segmentation tool segment_subregions thalamus (https://surfer.nmr.mgh.harvard.edu/fswiki/SubregionSegmentation). This was successful, but trac-all looks for the ThalamicNuclei.v12.T1.FSvoxelSpace.mgz file, whereas the subregion segmentation produces the file ThalamicNuclei.FSvoxelSpace.mgz. I'm wondering two things: (1) is the new segmentation tool compatible with trac-all (the wiki says the results will be very close but not identical), and (2) if so, would it be appropriate to rename/link the file so that trac-all can find it, as this user did with the ThalamicNuclei.v13 file (https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg73065.html)? Thank you in advance for any suggestions you might have, and please let me know if anything needs clarified. Best, Makenna Makenna McGill (she/her) Doctoral Student in Clinical Psychology University of Texas at Austin _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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