External Email - Use Caution Hello dear all,
I want to use Freesurfer-Samseg for MS lesion segmentation(cross-sectional). I got the T1 and Flair for this. I registered *flair to t1 *for every patient. My manual lesion masks are on DIR imaging. I am using FSL for registration. When I try to register my manual mask to new mask created by freesurfer samseg, fsl couldn't recognize the lesions.mgz extension. Or should I use t1 space for registration? i tried that one. and then, my registration result was really bad. As a consequence, ho should we deal with mask registration? Best, Dilek
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